My thoughts, for what little those are worth, are that you have to look at it as a pair of canceling reactions. Two Hydrogen-1 nuclei come together for an instant in a fusion reaction, then almost immediately decay through proton emmission or spontaneous fission (in this context the exact same thing). This reaction dominate the fusion cycle of the sun.
The energy balances as the masses are not diminishing, as a net reaction it is neither endothermic nor exothermic. 1 out of 10^19 times this fusion occurs the decompostion spits a positron rather than the proton. That positron finds an electron and annihilates, or gets absorbed, or emitted, or whatever else, it doesn't matter in this context.
What does matter is that the newly formed atom is Hydrogen-2 (Deuterium). That deuterium can then fuse with Hydrogen-1 or Hydrogen-2 (Deuterium) to form Helium-3 or Helium-4 both of which are stable, and this is for sure an exothermic reaction.
Now lets think about this on a time scale. If that H1+H1->H2 + p only occurs in 1 out of 10^19 reactions, and for the sake of argument lets say the atoms in that reaction fuse and decompose a 100 times a second (made up just chose a number at random). Then you are looking at the desired reaction to make deuterium occurring randomly at any point in the next 3.17 Billion years
[(10^19) / (100 * 3600 * 24 * 365)].
So you have this reaction that is really doing nothing over and over again for billions of years, waiting on the real party to get started.
That was super verbose and upon rereading your question it is not really addressing the question. I just did the math 3 times myself to confirm that what you say is correct. The mass of the diproton particle is in fact higher than the combined masses of two hydrogen-1 atoms. Upon reflection this makes some level of sense. The two proton are held together only briefly by their kinetic energies which must be bound up somewhere (in this case the mass difference). So that would make the H1+H1=>He2 (Diproton) Endothermic and the He2=>H1+H1 Exothermic as that binding energy (mass) would again be released.
Again just my thoughts for what it is worth.