Replacing R$_3$ with a wire is just replacing in with a very small resistor. Wires do have some resistance, just much smaller than a normal resistor. For a balanced bridge, V$_{BD} = 0$. So
$$I = V_{BD}/R_{wire} = 0$$
If you were to consider the wires from the battery to the Wheatstone Bridge as very small resistors, R$_0$ and R$_6$, you would find the total resistance is
$$R = R_0 + R_{bridge} + R_6 \approx R_{bridge}$$
So the total current would be approximately unchanged
$$I = V/R \approx V/R_{bridge}$$
The voltage drop across R$_0$ and R$_6$ would be approximately $0$, but not exactly $0$.
$$V_0 = I R_0 \approx 0$$
It might help to think of an analogous set of pipes with water flowing through them.
Voltage is like water pressure. Water pressure pushes water through pipes. A voltage difference pushes electrons through wires.
An electric current is like a water current. A water current is the amount of flowing water per second. An electric current is the amount of flowing electrons per second.
A resistor is like friction in a pipe. A narrow pipe has more friction. A resistor impedes the flow of electrons.
In a balanced bridge, there is no voltage difference between B and D. Nothing pushes electrons to flow, even if there is a low resistance. Just like if the water pressure was equal, there would be nothing pushing water to flow.
The situation is different for R$_0$ and R$_6$. The battery is like a source of high pressure water. Water flows through big fat pipes to and from the bridge. There is very little to impede the flow, so there is very little pressure difference between the ends of those pipes. Lots of water flows. The amount depends on how restrictive the pipes in the bridge are.