Let's say we have a massless rod of length $2\,\mathrm{m}$ that has a $1\, \mathrm{kg}$ ball at one end and another $1\,\mathrm{kg}$ ball at the other end.$$ \begin{array}{c} {\displaystyle{~\large{{\bigodot}\!\!\!\!\!\!\frac{\hspace{277px}}{2\,\mathrm{m}}\!\!\!\!\!\!\!\bigodot}}}\\ \begin{array}{lcr} 1 \, \mathrm{kg} & & 1 \, \mathrm{kg} \\ \hspace{249px} \end{array} \end{array} $$
If a force $F$ is applied at the center of mass, the center of mass will have an acceleration of $a=\frac{F}{m}.$
What is the effect on linear acceleration if the force is applied to the left ball on the rod? By the formula $F=ma$, the location of force shouldn't affect linear acceleration, but if the force causes the system to rotate, wouldn't the system not move as far linearly?
Essentially what I'm asking is in both cases where the force is applied either to the center of mass of the end of the rod, does the center of mass travel the same distance in a given time frame?