My quantum mechanics book (http://www-thphys.physics.ox.ac.uk/people/JamesBinney/qb.pdf, pages 94-95 of the pdf, or 86-87 of the book) considers the one dimensional step potential $$V(x)=V_0,|x|<a,$$$$V(x)=0, |x|>a$$ It says to consider the case where the total energy of an incoming particle $E>V_0$ and $V_0<0$. Then it says that in this case, we will have reflected and transmitted particles. It says the transmitted particles can be divided into two cases, those that go straight through without being disturbed, or those that are trapped and later transmitted, i.e scattered. All the reflected particles have been scattered. This makes sense.
Now it defines the scattering cross section as the total probability for scattering. This is the sum of the probability for reflection, $|R|^2=\frac{|A_{ref}|^2}{|A_{in}|^2}$, where $A_{in}$ represents the amplitude of the incoming wavefunction which will be $A_{in}e^{ikx}$ and $A_{ref}$ represents the amplitude of the reflected wavefunction which will be $A_{ref}e^{-ikx}$, and the probability for transmission by scattering, which is where my problem arises.
So again we can say we have some transmitted wavefunction $A_{trans}e^{ikx}$, but now my book states that we should write $A_{trans}=(1+T)A_{in}$, where the one represents the possibility of a particle passing through and being transmitted without being disturbed, and the $T$ represents the possibility of a particle being trapped and subsequently scattered. Then the probability for transmission by scattering is $|T|^2$ and the scattering cross section is $$\sigma=|R|^2+|T|^2$$.
So basically I don't really understand how defining $T$ in terms of those two amplitudes ensures $|T^2|$ is the probability to be transmitted via a scattering process, and nor why the one represents being undisturbed and the $T$ being scattered. Thanks for any help in advance :)
Edit: As an extra question (but not really important relative to the above), surely you could define such a cross section even if $V_0>0$ so long as $E>V_0$ and the particle was free, because then you would always get some trapping of particles from repeated reflections in the step region. Is this right?