What changes between frames in the case of a linear medium is not so much Maxwell's equations as the constitutive relations. The displacement field $\mathbf{D}$ and the auxiliary field $\mathbf{H}$ are defined in the rest frame of the medium as $\mathbf{D} = \epsilon \mathbf{E}$ and $\mathbf{H} = \mu^{-1} \mathbf{B}$, where $\mathbf{E}$ and $\mathbf{B}$ are the fields in the rest frame. But in a different rest frame, we will see different, more complicated relationships between $\mathbf{D}', \mathbf{H}', \mathbf{E}'$, and $\mathbf{B}'$. IIRC, in general the speed $\mathbf{u}$ of the medium in the new frame will enter into these constitutive relations; and $\mathbf{D}'$ will generally depend on both $\mathbf{E}'$ and $\mathbf{B}'$, as will $\mathbf{H}'$. The net effect will be to yield a much more complicated set of equations in which wave solutions travel at different speeds in different directions.
It is worth noting that in both the rest frame of the medium and the frame in which the medium is moving, the "vacuum form" of Maxwell's equations (given in the OP) should still hold. However, when viewed this way, the changing polarization and magnetization of the medium gives rise to a time-dependent $\rho$ and $\mathbf{J}$ (the bound charges and the bound currents) in the rest frame of the medium. These bound charges and bound currents would transform when we viewed the wave in a frame in which the medium is moving, in such a way that the new fields and sources $\mathbf{E}'$, $\mathbf{B}'$, $\rho'$, $\mathbf{J}'$ would also satisfy Maxwell's equation in "vacuum form".