There was no paradox in the Pound Rebka (PR) experiment. It was designed and proposed to determine if indeed there is a frequency shift when light travels in a gravitational field that is different when emitted than when received.
GR, general relativity, predicted that when light travels in a gravitational field that changes, the frequency will change, or equivalently time will be slower in one end than the other. In the PR experiment the light was emitted at the top of a tower, and would have been received at the bottom as BLUESHIFTED. They had the receiver go up at some speed to cause an opposite redshift due to Doppler, and the two cancelled. It was done in 1959, and was a test of GR. Initially it was to 10% accuracy, later gotten to 1%. Experiments with masers later got the results, by others than PR, to 0.01%. Not sure if that's been improved.
No controversy. The gravitational field causes a red or blue shift - depending on whether you go to a stronger or weaker gravitational filed. For the tower, if was going towards the earth, a stronger field, and it would have been a blueshift. The Doppler effect from the motion of the receiver caused a redshift, and they cancelled when the velocity was adjusted just right.
The red and blue shifts were very small, it was over vertical distance of about 20 meters, and the shift was about 1 part in $10^{15}$, and the speed they used for the receiver motion was also very small. They used a 14 kEV gamma ray from an atom. See the description at https://en.m.wikipedia.org/wiki/Pound–Rebka_experiment