What is the most general meaning of the expression covariant, but not manifestly covariant? Suppose I have a general (local) change of coordinates, $x^{\prime} = f(x)$, on an $(n+1)$-dimensional smooth manifold on which some classical fields are defined, say $A_{\alpha}(x_0,x_1,...,x_n)$, which transform into $A_{\alpha}^{\prime}(x^{\prime})$. Suppose the fields $A_{\alpha}(x)$ satisfy some equations of motion, where $x_0 = t$. How should these EOMs look like to be covariant with respect to the given change of coordinates, but not manifestly covariant? Could you explain in plain words the difference between the 2 forms of the EOMs?
If possible, can you write down a practical example of such a situation encountered in physics?
Thx.