My Question
Are the operators for the $A$, $E$ and $B$ field to be treated as operators in a Heisenberg description or is their time dependence explicit when performing a textbook EM quantization as in Sakurai?
The following two sections document the chain of thoughts that brought me to this point and define the quantities I am talking about.
Quantization of the EM Field
In the standard textbook procedure of quantizing the EM field (like the following from Sakurai) one usually starts with a Coulomb gauge in vacuum, which leads to an expression for the $A$-field which has the form
$\mathbf{A}(\mathbf{x};t) = \sum_{\mathbf{k},\lambda} A_{\mathbf{k},\lambda}(\mathbf{x};t) \ \mathbf{e}_{\mathbf{k},\lambda}$,
where $\mathbf{e}_{\mathbf{k},\lambda}$ are the unit vectors of circular polarizations and
$A_{\mathbf{k},\lambda}(\mathbf{x};t) = A_{\mathbf{k},\lambda} e^{- i(\omega_k t - \mathbf{k} \cdot \mathbf{x})} + c.c.$
The procedure is now to find an expression for the energy density of the field and identify the appropriate choice for annihilation and creation operators. In Gaussian units this would be
$A_{\mathbf{k},\lambda} = \sqrt{\frac{4 \pi\hbar c^2}{2 \omega_k V}} \ a_{\lambda}(\mathbf{k})$,
where $a_{\lambda}(\mathbf{k})$ are boson operators. So far, so good. Now my conceptional problems start. If I now consider the quantized version of a single mode $E$ field, it has the form
$\mathbf{E}(\mathbf{x};t) = i E^{0}_k \left(a_{\lambda}(\mathbf{k}) e^{- i(\omega_k t - \mathbf{k} \cdot \mathbf{x})} - h.c.\right) \mathbf{e}_{\mathbf{k},\lambda}$,
where $E^{0}_k = \sqrt{\frac{4 \pi \hbar \omega_k}{2 V}}$.
My Problem
In the description of a two-level system with ladder operators $\sigma$ and $\sigma^\dagger$ which is interacting with a single mode cavity one usually considers a coupling of the form
$H = \hbar g\ (\sigma+\sigma^\dagger)(a+a^\dagger)$
with coupling parameter $g$. This is surprising for me, since my naive assumption would be to start from a dipole interaction with the quantized field that I derived above and write
$H = - \boldsymbol{\mu} \cdot \mathbf{E}(\mathbf{x};t)$
I understand how to get rid of the space dependency by considering a long-wavelength limit but I have no idea how to treat the time dependence of the field. My feeling is that the operators which emerged in this quantization procedure should be treated as being Heisenberg operators evolving in time but I am not sure about this. The way of performing the quantization in this way offers less insight to me whether the result should be understood in the Heisenberg picture or not. Especially because usual Schrödinger operators are allowed to have explicit time-dependence.