Starting from (note that there's an error in your formula since the first lagrangian has to be the prime, transformed, lagrangian)
$$\int_{\Omega'} {L^\prime(\alpha,\partial_{\nu}\alpha,\xi^\mu) d^{4}\xi} - \int_{\Omega} {L(\phi,\partial_{\nu}\phi,x^\mu) d^{4}x}$$
if you want to change the volume of integration, we have to find the Jacobian, which, given the transformation, is simply
$$J = \frac{\partial \xi^{\sigma}}{\partial x^\sigma} = 1 + \partial_\sigma\delta x^\sigma $$
If you plug this in the integrals you find
$$\int_\Omega d^4x \left[(1+\partial_\sigma\delta x^\sigma)L^\prime-L\right] $$
which at first order leaves you with
$$\int_\Omega d^4x\,\left[(L^\prime-L)+\partial_\sigma\delta x^\sigma L\right] = \int_\Omega d^4x\left[\Delta L+\partial_\sigma\delta x^\sigma L\right]$$
where $\Delta L$ is the total variation of the lagrangian. This is given by
$$\Delta L = L^\prime(\alpha, \partial_\mu\alpha, \xi^\mu)-L(\phi, \partial_\mu\phi, x^\mu) = \frac{\partial L}{\partial \phi}\delta\phi+\frac{\partial L}{\partial\phi_{,\mu}}\delta\phi_{,\mu}+\frac{\partial L}{\partial x^\mu}\delta x^\mu+\delta L(\phi, \partial_\mu\phi, x^\mu) $$
in first order in $\delta$. Now we can do some manipulations: the integral becomes
$$\int_\Omega d^4 x\left[\frac{\partial L}{\partial \phi}\delta\phi+\frac{\partial L}{\partial\phi_{,\mu}}\delta\phi_{,\mu}+\frac{\partial L}{\partial x^\mu}\delta x^\mu+\delta L(\phi, \partial_\mu\phi, x^\mu)+\partial_\sigma\delta x^\sigma L\right] \\
= \int_\Omega d^4 x\left[\delta L + \frac{\partial L}{\partial \phi}\delta\phi+\color{red}{\frac{\partial L}{\partial (\partial_\mu \phi)}\delta\partial_\mu\phi} + \color{orange}{((\partial_\mu L)\delta x^\mu+(\partial_\mu\delta x^\mu)L)}\right]$$
where I've changed the mute index $\sigma$ to $\mu$. The red term can be rewritten as a divergence using the distribution formula for derivative
$$\frac{\partial L}{\partial (\partial_\mu \phi)}\delta\partial_\mu\phi = \partial_\mu\left(\frac{\partial L}{\partial (\partial_\mu \phi)}\delta\phi\right)-\left(\partial_\mu\frac{\partial L}{\partial (\partial_\mu \phi)}\right)\delta\phi$$
In much the same way, the orange term gives
$$ ((\partial_\mu L)\delta x^\mu+(\partial_\mu\delta x^\mu)L) = \partial_\mu(L\delta x^\mu)$$
so the integral becomes
$$\int_\Omega d^4 x \left[\delta L +\color{red}{\left(\frac{\partial L}{\partial\phi}-\partial_\mu\frac{\partial L}{\partial \phi_{,\mu}}\right)\delta\phi}+\partial_\mu\left(\frac{\partial L}{\partial \phi_{,\mu}}\delta\phi\right)+\partial_\mu(L\delta x^\mu)\right] $$
the red term is zero for the Euler-Lagrange equation. So in the end
$$\int_\Omega d^4 x \left[\delta L+\partial_\mu\left(\frac{\partial L}{\partial \phi_{,\mu}}\delta\phi+L\delta x^\mu\right)\right] $$
which is exactly your result once you write down the difference between the two lagrangians.
Just to be complete, let me end the proof by putting to zero the integral and noting that $\delta L$ can only be a total derivative $\delta L = \partial_\mu\delta \Lambda^\mu$ and getting
$$\int_\Omega d^4 x\, \partial_\mu\left(\frac{\partial L}{\partial \phi_{,\mu}}\delta\phi+L\delta x^\mu+\delta\Lambda^\mu\right) = 0 \implies \partial_\mu \left(\frac{\partial L}{\partial \phi_{,\mu}}\delta\phi+L\delta x^\mu+\delta\Lambda^\mu\right) = 0$$
The conserved current therefore is given by
$$ J^\mu = \frac{\partial L}{\partial \phi_{,\mu}}\delta\phi+L\delta x^\mu+\delta\Lambda^\mu $$
Notation:
Just occurred to me that many won't be familiar with this notation which is borrowed from general relativity, so i'll leave it here
$$\partial_\mu\phi = \phi_{,\mu}$$