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Molecular dynamics (MD) is an approach used for simulating dynamic processes through successive integration of Newton's equations of motion.

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Molecular Dynamics Software for Coarse Grained Polymers

I've been working with LAMMPS, NAMD and ESPResSoMD and I can tell you ESPResSoMD is the best package for simulating coarse-grained models. It has two versions: Tcl and python based interface ( the pyt …