I am currently looking at a paper (C. Ortix, "Quantum mechanics of a spin-orbit coupled electron constrained to a space curve", Phys. Rev. B 91 (2015) 245412, arXiv:1504.00840) where spin-orbit coupling (SOC) in quasi-one-dimensional quantum wires is studied. The starting point is a SOC Hamiltonian
$$ H= \frac{\mathbf p^2}{2m} + \mathbf\alpha\cdot(\mathbf\sigma\times\mathbf p). \tag{1} $$
Now, since $\alpha$ should in general be position dependent (the authors, for example, eventually turn to a helix), I don't see how $(1)$ would be Hermitian. In the paper, the authors go to a co-moving coordinate system and translate the Hamiltonian to general curved-coordinate form: $$ H = -\frac{\hbar^2}{2m}G^{\mu\nu}D_\mu D_\nu-i\hbar \frac{\varepsilon^{\mu\nu\lambda}}{\|G\|}\alpha_\mu\gamma_\nu\partial_\lambda, \tag{2} $$
where $\gamma_\mu$ generate the curved space Clifford algebra, $\{\gamma_\mu,\gamma_\nu\}=2G_{\mu\nu}$. Here, the components $\alpha_\mu$ are constant while the matrices $\gamma_\mu$ clearly depend on the coordinates. Hence, again, I do not see how $(2)$ is Hermitian.
At the same time, the effective 1-dim. Hamiltonian that is derived from this by adding strong confining potentials, expanding the Hamiltonian to second order in the directions normal and binormal to the path and averaging out these degrees of freedom, is Hermitian.
My question is: Why does the general 3d SOC Hamiltonian $(1)$ or $(2)$ not have to be Hermitian? Ok, the 1d derived from it somehow is (I'm not quoting the latter because I don't think its precise form matters here) but why would we even start with a Hamiltonian that's not physical?
PS: I found one related question (Spin-orbit model; Hamiltonian seems to be non-Hermitian) but there, the issue is only mentioned, not discussed further.