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The imitation of a real-world process using an analogous process that is easier to control and experiment with.

3 votes
2 answers
514 views

Molecular Dynamics vs energy minimization in protein folding

(assuming that a dipeptide would fold) Stated in other words, do MD simulations (enough steps+ perfect forcefields + no cutt offs) lead to minimum free energy? …
biofan's user avatar
  • 71
0 votes
1 answer
130 views

Molecular dynamic simulation of proteins

Is molecular dynamics simulations actually run on a single protein molecule to give the structure with minimum Gibbs free energy or does it consider many molecules at once (what I think ensemble is meant …
biofan's user avatar
  • 71