So a hypothetical question in which the hypothetical breaks a law of physics can always be problematic, since you need to decide how to break the law of physics, and that choice cannot be justified by physics---nevertheless, ppl will attack your choice based on it violating physics, which it has to do. tl;dr: any comments about ignoring a law of physics will ignored with equal vigor. Your supposition is correct, for an atom with a nuclear mass $M$, one can posit: $$ \frac 1 2 \le \frac{m_e} M \le 294 $$ which starts at the exotic atom positronium, and tops out at Oganesson-294. That means the nucleus is not stationary. Labeling the two particles' positions $\vec r_N$, $\vec r_e$, we have a hamiltonian (in the Coulomb approximation...and likewise for the position): $$ H(\vec r_N, \vec r_e) = \frac{p^2_N}{2M} + \frac{p^2_e}{2m_2} + V(|\vec r_N - \vec r_e|) $$ which is not fun. We note that the position dependence can be expressed in term of the vector: $$ \vec r \equiv \vec r_e - \vec r_N $$ moreover, it only depends on the magnitude: $$ r= |\vec r| $$ (which means we have spherical symmetry). Step 1 is to defined the center of mass affine position: $$ \vec R = \frac{M\vec r_N + m_e \vec r_e} {M+m_e} $$ with conjugate momentum $\vec P$. Step 2 is define the reduced mass, $\mu$, associated with the coordinate _vector_ $\vec r$: $$ \frac 1 {\mu} = \frac 1 M + \frac 1 {m_e} $$ The Hamiltonian is then: $$ H = \frac{P^2}{2(M+m_e)} + \frac{p^2}{2\mu} + V(r) $$ which contains a free-particle term: $$H_{CoM} \equiv \frac{P^2}{2(M+m_e)} $$ and a pure Coulomb term: $$H \equiv \frac{p^2}{2\mu} + V(r) $$ where: $$ V(r) = \frac 1 {4\pi\epsilon_0} \frac{Ze^2} r $$ At this point, we ignore the center-of-mass motion, and solve for the orbit (classical) or hydrogen-like atom (quantum). As you point out in the post: yes, the nucleus undergoes 'reciprocal' motion. This means it classically is also in an elliptical orbit about the barycenter (aka: CoM), and in quantum mechanics, it is also in an orbital with a wave function $\Psi_{nlm}(\vec r_N)$ that has the same functional form as the atomic orbitals $\psi^{(e)}(\vec r_e)$. Nevertheless, super-imposing the two motions is messy, so we call the atomic orbital $$ \psi_{nlm}(\vec r) $$ and compute it with mass $\mu$. The original question: "how are the two ellipses related" is that they are related by dilation symmetry, where the scale factor is a ratio of the two masses. In the case of positronium: $$\frac{m_e}{M} = \frac{m_e}{m_e}=1 $$ and they are identical, while for the largest atom: $$ \frac{m_e}{M} \approx \frac{m_{AMU}/1823}{294m_{AMU}} \approx \frac{1}{536,000}$$ so the size of the ellipse (or orbital) of the nucleus is: $$ a_N \approx 0.1\,{\rm fm} = \frac{R_p}{12} $$ where: $$ R_p = 0.88\,{\rm fm} $$ is the proton radius. Regarding the hypothetic part: a classical orbit radiates EM waves because charges are accelerated. Since they electron moves at: $$ v \approx \alpha c $$ in a radius: $$ a_0 =\lambda_C/\alpha $$ where $\alpha \approx 1/137$ is the fine structure constant, and $$\lambda_C = \frac h {m_ec} \approx 4\times 10^{-13} \,{\rm m} $$ is the Compton wavelength of the electron, we can ball park the acceleration: $$ a = \frac{v^2} r = \frac{\alpha^2 c^2}{\lambda_C/\alpha}$$ $$ a = \frac{m_e}{h}\big(\alpha c\big)^3 \approx 10^{22}\, g $$ Wow. That is big, and that is for $Z=1$. I'll leave it as an exercise to estimate the result for $Z=118$. Quantum mechanics of course precludes this state from radiating. (As an aside: as $Z\alpha \rightarrow 1$ this estimate runs into relativity problems as $v\rightarrow c$, and the naive radius gets down to the Compton wavelength)