The object will deform. Point A will initially accelerate at a higher rate than Point B.
The simplest model of a deformable object is one made up of a bunch of point masses connected by springs (often stiff springs). There are more complicated ways to think about it, but this is probably the easiest. With this model it's pretty easy to see that if you apply a force to Point A, the springs will initially apply no forces between points A and B, and point A will accelerate. As it moves, the spring gets compressed, and this begins applying a force to point B. At first, this force will be smaller than the applied force. Over time, you will compress the springs more and more until they reach the new equilibrium. When this happens, point A and B will be accelerating at the same rate, just like in the rigid body case. But in the transient period before that, they accelerate at a different rate.