The paper whose press release you cite looks at a number of baryons and other hadrons:
In this Letter, we report the most precise estimation to date of $μ_B$ and $μ_Q$ obtained from a set of antiparticle-to-particle yield ratios. The analyzed species are charged pions, protons, $Ω^−$ baryons, and light (hyper)nuclei. (Anti)protons are the most abundantly produced (anti)baryons at midrapidity (≈ 35 and ≈ 2 protons on average in central and peripheral Pb–Pb collisions, respectively [45]). Consequently, the antiproton-to-proton yield ratio can probe the antibaryon-to-baryon imbalance [42, 46] with high precision. On the other hand, the sensitivity to baryon asymmetry is enhanced when light (hyper)nuclei are included because of their larger baryon content. In this work, $\rm ^3He$, its isobar $\rm ^3H$, and hypertriton $\rm ^3_ΛH$, which is a bound state of a proton, a neutron, and a Λ, along with their antimatter counterparts, are considered$^1$. The ratio of oppositely charged pions provides a precise constraint on the imbalance of electric charge, as the yield ratio depends predominantly on $μ_Q$. Finally, the dependence of antimatter-to-matter ratios on strangeness is probed with (anti)$Ω^−$ baryons, which, unlike (anti)Λ and (anti)$Ξ^−$, have negligible contamination coming from heavier hadron decays.
The number headlined in the press release, a proton-antiproton asymmetry of $0.986±0.006$, is one of of about thirty such ratios reported in Figure A.1 of the paper. I have only skimmed the paper, rather than trying to reproduce the analysis, but they report the "baryon chemical potential $\mu_B$," which is a measure of baryon-number nonconservation in the context of a statistical ensemble of particles and antiparticles, to be "compatible with zero within $1.6\sigma$." This is a result you would expect in somewhat more than one in twenty experiments if the actual baryon number violation were zero, just due to statistical fluctuations.
You contrast with cold proton decay experiments, but you may not have done the arithmetic. All of the processes in the Standard Model are happening all of the time, because our universe only has one vacuum state, and the Standard Model describes its symmetries and their particle-like properties. There are frequently situations where you can neglect some weak or rare process, but you can never turn these processes off. Compare with air resistance, which we frequently have intro-physics students ignore, whether that ignoring is appropriate or not. We usually don't teach the rule of thumb that air resistance becomes important when the mass of displaced air becomes comparable to the mass of the object that's moving. This is why you can ignore air resistance if you're juggling golf balls but not if you're playing golf; this is why you can say that interplanetary space is a vacuum, but also talk about the hydrodynamics of the solar wind and its effect on interplanetary dust.
The LHC can excite the vacuum to temperatures where we might hope to see signs of baryon-number violation in $10^{20\text{-ish}}$ interactions. (I don't actually know the size of the LHC dataset. The part-per-billion measurements that I've done needed $10^{19\text{-ish}}$ interactions to get the statistical noise small enough to be interesting; I remember suddenly realizing that I was analyzing the behavior of an entire microgram of free neutrons.) The proton-decay experiment at Super-Kamiokande looked at $10^{30\text{-ish}}$ protons for several years, setting a lower limit on baryon-number-violating decays at zero temperature somewhere above $10^{33}$ years. I don't know which result is more stringent, but I'm pretty sure it's the cold protons.