The wormhole itself is regarded as the common boundaries of one or two manifolds when identified with each other to glue them together. Therefore the (three-dimensional) hypersurface with $r=r_\mathrm{S}$ (or $u=0$ after the shift) for the Schwarzschild wormhole (and not some random interval around them). It is not possible putting this into the formulas for the Kruskal coordinates directly, which are not defined for $r=r_\mathrm{S}$ put taking the limit $r\rightarrow r_\mathrm{S}$, you indeed get $X=0$ and $T=0$.
In your case, there are two seperate manifolds/universes glued together. Consider the Schwarzschild metric: Topologically, you remove a singularity from $\mathbb{R}\times\mathbb{R}^3$ to get $\mathbb{R}\times(\mathbb{R}^3\setminus\{0\})$ and using $\mathbb{R}^3\setminus\{0\}\cong S^2\times\mathbb{R}^+$, you get $\mathbb{R}\times S^2\times\mathbb{R}^+$ with boundary $\mathbb{R}\times S^2$, basically corresponding to the surface of the blackhole going through time. Now consider the Schwarzschild wormhole: Topologically, you take two such manifolds $\mathbb{R}\times S^2\times\mathbb{R}^+$ and glue them together at $\mathbb{R}\times S^2$ to get $\mathbb{R}^2\times S^2$.
Glueing together boundaries of one or two manifolds is described by the trace and composition respectivly in cobordism theory, if you want to look that up. Cobordisms are manifolds connecting two closed manifolds with one dimension less, so for example the cylinder $M\times[0;1]$ connecting $M$ with $M$. If there is a common boundary of one cobordism and itself (like in the example just given) or with another, then you can glue them together just like above for two copies of the Schwarzschild metric, so for example getting the torus $M\times S^1$ connecting $\emptyset$ with $\emptyset$ in the example just given.
Intra-universe wormholes connecting the same universe with itself are also possible and can be guaranteed by topology. There is a theorem in "Lorentzian spacetimes" by Matt Visser which is written down on Wikipedia to guarantee their existence. As you can see there, the boundary of the manifold goes into the theorem:
If a Minkowski spacetime contains a compact region $\Omega$, and if the topology of $\Omega$ is of the form $\Omega\cong\mathbb{R}\times\Sigma$, where $\Sigma$ is a three-manifold of the nontrivial topology, whose boundary has topology of the form $\partial\Sigma\cong S^2$, and if, furthermore, the hypersurfaces $\Sigma$ are all spacelike, then the region $\Omega$ contains a quasipermanent intrauniverse wormhole.