In physics we always say that a theory cannot hold once experimental proof to the contrary is given. So how do we rectify these two conflicting ideas?
Science is not so binary or linear as that. There is a lot of conflicting information, false starts, mistakes, and experimental uncertainties. Replication is important, as is credibility and experimental care.
A better model for scientific progress is Bayesian inference. New evidence shifts our belief in a theory based both on the strength of the prior evidence and on the strength of the new evidence.
In this case the prior evidence supporting general relativity is exceptionally strong. GR has been verified with a wide variety of different tests using different technologies and testing, performed by the most expert labs, and published in the most reputable journals. Therefore it will take similarly exceptionally strong evidence to refute it.
This particular experiment is published in a journal with no reputation (not even listed by typical indexing services), by a group I have never heard of, with no corroborating follow-up experiments, no confirmation by other technologies, and with many opportunities for experimental mistakes. This experiment is rather weak evidence. It should be considered and slightly reduce our posterior credence in GR. But it is certainly nowhere near strong enough to refute GR entirely by itself.