It would make no difference.
Note that if a person stands on a scale part of him will be in contact with the scale whether the suction cups are on or off. Let us suppose he has suction cups on both feet that are always on. But sometimes he stands on one foot.
First a caveat. Air has mass and therefore weight. It gets confusing when you try to make sense of that weight because you don't put a piece of air on a scale to weigh it. Air is all around. The mass of a cubic meter of air is about 1 kg, so its weight is 9.8 N. This is small enough that we will ignore it. We could do this problem again taking this into account. It would give the same result.
Start with a scale that has nothing on it. It shows a weight of $0$. Such a scale has a plate where you put objects Air pressure exerts tremendous forces on the plate. Air on top presses down. Air on the bottom presses up equally hard. The net force from air is $0$. The plate itself weighs something, but the scale is built to show that weight as $0$.
A person with suction cups stands on scale with a built in trap door. The trap door opens and the person begins to fall. Air pressure presses on all sides. The net force of air pressure is $0$. The total force is the force of gravity, or his weight, $W$.
He stands on the trap door or the scale with no air under the suction cups. The suction cups cover regions $R_L$ and $R_R$ of the door. Normally, air would be exerting a force $F_L$ on $R_L$ and $F_R$ on $R_R$. Note that if the door was open, air would exert the same force upward on the bottom of the suction cups.
To hold the person still, the door must exert an upward force of $F_L+R_R+W$. The person exerts an equal and opposite downward force $F_L+R_R+W$ on the door.
Suppose he picks up his right foot. Now the downward force he exerts on the scale is $F_L+W$. But air now presses on $R_R$ with a force $F_R$. So the downward force on $R_L$ and $R_R$ is the same.