Simple. Your initial force only acts for some finite duration, over which body will get final momentum due to second Newton law :
$$ p= p_{_0} + F\tau $$,
Where $\tau$ is pushing force duration, time window when you actually apply your force.
Afterwards, over small duration of time, kinetic friction will do a negative work towards body,- decreasing your initial given kinetic energy by some fixed amount, repeatedly, until body will finally stop after traveling distance $d$.
What distance $d$ it will travel, can be find out, by equating friction total work done until it stops body to the kinetic energy body had at first moments due to your pushing force :
$$ \frac {p^2}{2m} = \mu Nd $$,
where $N$ is normal force, and $\mu$ is coefficient of kinetic friction.
The only question remains is that, why friction can stop any object with arbitrary huge kinetic energies, given enough time ? Answer is that no matter your force magnitude,- you can only act for a reasonable period of time. But friction force is proportional to normal force which is proportional to body weight :
$$ F_{fr} \propto N \propto mg $$
And gravity never sleeps, and will continue to act over all bodies until gravity source exists, so it will stop anything sooner or later. Unless you give so much kinetic energy, that body escapes Earth at all and becomes it's satellite, that's how rocket's do. Or
you may constantly re-supply kinetic energy what's lost due to friction (i.e., rolling resistance + air drag),- that's how cars do it, by burning fuel.