You correctly write the equation in the integral form as
$$c^2(\text{circulation of B around the curve} \ C)=\frac{d}{dt}(\text{Flux of E through the surface}\ S)+\frac{\text{Flux of electric current through}\ S}{\varepsilon_0}$$
which written as formula is
$$c^2\oint_{C=\partial S} \mathbf{B}\cdot \mathrm{d}\mathbf{l} = \frac{\mathrm{d}}{\mathrm{d}t} \iint_S \mathbf{E}\cdot\mathrm{d}\mathbf{S} + \frac{1}{\varepsilon_0}\iint_S \mathbf{J}\cdot\mathrm{d}\mathbf{S}$$
Note that the flux of a vector field across a surface is just the integral of the dot product of the field with the normal surface element. There is no divergence operator!
Now the key to go to the usual differential form is to write all the terms in the previous equation as integrals over the same domain.
Things look pretty good on the right-hand side because both terms are integrals over a surface $S$. We need to fix only the term on the left-hand side of the equation: we want to convert the integral over the curve $C$ to an integral over the surface $S$ (note that the curve $C$ is the "border" of $S$).
Luckily there is a very useful theorem, called the Stokes' theorem, which tells you that (under some assumptions) you can substitute the integral of a vector field over a closed line, with the integral of the rotor of such vector field over a surface having that line as its boundary. In a formula
$$
\oint_{C=\partial S} \mathbf{A}\cdot \mathrm{d}\mathbf{l} = \iint_S \nabla \times \mathbf{A}\cdot\mathrm{d}\mathbf{S}
$$
If we apply this theorem to the left-hand side of the equation we have
$$\oint_{C=\partial S} \mathbf{B}\cdot \mathrm{d}\mathbf{l} = \iint_S \nabla \times \mathbf{B}\cdot\mathrm{d}\mathbf{S}$$
At this point, we are all set, because your initial integral equation becomes
$$c^2\iint_S \nabla \times \mathbf{B}\cdot\mathrm{d}\mathbf{S} = \frac{\mathrm{d}}{\mathrm{d}t} \iint_S \mathbf{E}\cdot\mathrm{d}\mathbf{S} + \frac{1}{\varepsilon_0}\iint_S \mathbf{J}\cdot\mathrm{d}\mathbf{S} $$
Allow me to place the time derivative inside the integral (disclaimer mathematicians hate physicists for doing this trick all the without checking that all the hypotheses are fulfilled) so to have
$$\iint_S c^2\nabla \times \mathbf{B}\cdot\mathrm{d}\mathbf{S} = \iint_S \frac{\mathrm{d}\mathbf{E}}{\mathrm{d}t}\cdot\mathrm{d}\mathbf{S} + \frac{1}{\varepsilon_0}\iint_S \mathbf{J}\cdot\mathrm{d}\mathbf{S} $$
or
$$\iint_S \underbrace{\left[c^2\nabla \times \mathbf{B} - \frac{\mathrm{d}\mathbf{E}}{\mathrm{d}t} - \frac{\mathbf{J}}{\varepsilon_0}\right]}_0\cdot\mathrm{d}\mathbf{S} = 0 $$
Now the integral equation is verified over any surface $S$ only if the integrand is always zero, hence
$$c^2\nabla \times \mathbf{B} - \frac{\mathrm{d}\mathbf{E}}{\mathrm{d}t} - \frac{\mathbf{J}}{\varepsilon_0}=0$$
which is indeed what you wanted to prove!