General superposition state (the $u_n (x)$ are the spatial part of the energy eigenfunctions):
$$\psi(x,t)=\sum_{n=1}^\infty c_n \psi_n(x,t) =\sum_{n=1}^\infty c_n u_n(x) \exp\left(-\frac{iE_n t}{\hbar}\right)$$
The expansion coefficients $c_n$ are (complex) constants
If a measurement is made:
When a measurement of some observable $O$ occurs, the wave function $\psi=\sum_nc_n \psi_n$ (where $\psi_n$ are the eigenfunctions with respect to $\hat{O}$ ) is projected onto one of the various possible measurement outcomes, with a probability of projection given by $|c_n |^2$.
However consider the example of a particle in a superposition state of the 1D infinite square well described by an equally weighted combination of the ground and the first state:
$$\psi(x,t)=\frac{1}{\sqrt{2}} \left[ u_1(x) \exp\left(-\frac{iE_1 t}{\hbar}\right)+u_2(x) \exp\left(-\frac{iE_2 t}{\hbar}\right) \right]$$
Probability density changes with time: $$|\psi(x,t)|^2=\frac{1}{2} u_1^2 (x)+ \frac{1}{2} u_2^2 (x)+u_1 (x) u_2 (x)\cos\left(\frac{(E_2-E_1)t}{\hbar}\right)$$
How are both of these true? Since $|c_n|^2$ is constant but $|\psi(x,t)|^2$ is not and they represent the same things (I think??)