$[H,P]=0$ means the Hamiltonian does not mix symmetric and antisymmetric states, i.e. for any $|\psi_\mathrm{S}\rangle$ and $|\psi_\mathrm{A}\rangle$ we have
$$
\langle\psi_\mathrm{S}|H|\psi_\mathrm{A}\rangle=0.
$$
There are two consequences:
1) If we try to find the eigenstate of $H$ as a mixture of symmetric and antisymmetric states,
$$
H(\alpha|\psi_\mathrm{S}\rangle+\beta|\psi_\mathrm{A}\rangle)=E(\alpha|\psi_\mathrm{S}\rangle+\beta|\psi_\mathrm{A}\rangle),
$$
then, by multiplying it by $\langle\psi_\mathrm{S}|$ or $\langle\psi_\mathrm{A}|$ from the left, we get:
$$
\alpha(E-\langle\psi_\mathrm{S}|H|\psi_\mathrm{S}\rangle)=0,\qquad\beta(E-\langle\psi_\mathrm{A}|H|\psi_\mathrm{A}\rangle)=0.
$$
So $\alpha$ and $\beta$ cannot be simultaneously nonzero if the energies of symmetric and antisymmetric states are different: $\langle\psi_\mathrm{S}|H|\psi_\mathrm{S}\rangle\neq\langle\psi_\mathrm{A}|H|\psi_\mathrm{A}\rangle$. For any realistic system of interacting particles it is the case.
Thus the eigenstates of interacting many-particle system are either symmetric or antisymmetric.
2) If $|\psi(t)\rangle$ is symmetric/antisymmetric at $t=0$, then, after the Schrodinger time evolution
$$
i\hbar\frac{\partial|\psi\rangle}{\partial t}=H|\psi\rangle,
$$
$|\psi(t)\rangle$ will remain symmetric/antisymmetric at $t>0$.
So we need to choose, depending on physical reasons, which sector of the Hilbert space (symmetric or antisymmetric) we are working in with the system of particles of given kind. There will be no physically realistic problem (both stationary $-$ when you find the Hamiltonian eigenstates, or nonstationary $-$ when you calculate time evolution) where you will need to mix symmetric and antisymmetric states.
Update: Symmetric and antisymmetric states have different energies, at least, by two reasons. First, the fermions need to fill the single-particle states with higher and higher energies up to the Fermi energy because of the Pauli exclusion principle, while bosons can condense in a single lowest-energy state. Second, the exchange energy of many-particle system, appearing in the Hartree-Fock approximation, is positive for bosons and negative for fermions. So it is reasonable to assume that the energies of ground as well as excite states of a Hamiltonian are different in symmetric and antisymmetric sectors (except some rare random coincidences), although I don't know the proof of this statement. Therefore the combined spectrum $\{E_n,P_n=\pm1\}$ of $H$ and $P$ is nondegenerate, and each eigenstate of $H$ is automatically an eigenstate of $P$ and vise versa.