Since this is very homework-like, a full solution should not be presented.
Nevertheless, OP seems to generally have confusion regarding all the 4-vector indices and seems to want a more detailed explanation.
For those reasons, I will show how to compute the derivative in great detail, for just part of the Lagrangian:
$$\mathscr{L}_1 = C_{1} (\partial_{\nu} A_{\mu}) (\partial^{\nu} A^{\mu})$$
Also, in order to avoid confusion between free and summed indices, I will compute
$$
\frac{\partial \mathscr{L}_1}{\partial (\partial_0 A^\rho)}\;,
$$
where I am using $\rho$ instead of $\nu$, since $\nu$ is already being used as a summed index in the Lagrangian.
First, rewrite $\mathscr{L}_1$ as:
$$
C_1(\partial_{\nu} A^{\alpha}) g_{\mu\alpha}g^{\nu\beta} (\partial_{\beta} A^{\mu})
$$
so that all the derivatives have the lower index (just like in the derivative of the Lagrangian we are interested in) and all the fields have upper index.
Then use:
$$
\frac{\partial \partial_\gamma A^{\delta}}{\partial \partial_0 A^{\rho}} = \delta^{0}_\gamma\delta^{\delta}_\rho
$$
And use the product rule to see that:
$$
\frac{\partial \mathscr{L}_1}{\partial (\partial_0 A^\rho)}
=C_1\frac{\partial}{\partial (\partial_0 A^\rho)}\left((\partial_{\nu} A^{\alpha}) g_{\mu\alpha}g^{\nu\beta} (\partial_{\beta} A^{\mu})\right)
$$
$$
=C_1\left(
\delta^{0}_\nu\delta^{\alpha}_\rho g_{\mu\alpha}g^{\nu\beta}(\partial_{\beta} A^{\mu})
+(\partial_{\nu} A^{\alpha}) g_{\mu\alpha}g^{\nu\beta}\delta^{0}_\beta\delta^{\mu}_\rho
\right)
$$
$$
=C_1\left(\partial^0 A_\rho + \partial^0A_\rho\right) = 2C_1\partial^0 A_\rho
$$
So, the final result:
$$
\frac{\partial \mathscr{L}_1}{\partial (\partial_0 A^\rho)}
=
2C_1\partial^0 A_\rho
$$