Consider the Earth and the falling stone as one system with no external forces acting on the system.
There are two internal forces which are the force on the Earth due to the gravitational attraction of the stone and the force on the stone due to the gravitational attraction of the Earth.
These two forces are a Newton third law action and reaction pair of the same type (gravitational) and must be equal in magnitude but opposite in direction.
Because there are no external forces the centre of mass of the Earth & stone system does not accelerate and so if the stone is accelerating towards the Earth the Earth must be accelerating towards the stone.
If the mass of the stone is $m$ then the force on the stone due to the Earth is $mg$ where $g$ is the acceleration of free fall of the stone towards the Earth.
If we assume $g \approx 10\, \rm m\,s^{-2}$ and $m \approx 0.1 \,\rm kg$ then the force on the stone due to the Earth is $10 \times 0.1 = 1 \, \rm N$.
This is the force on the Earth due to the stone and if the mass of the Earth is $6\times 10^{24} \approx 10^{25} \,\rm kg$ then the acceleration of the Earth is $\frac {1}{10^{25}} = 10 ^ {-25} \,\rm m \, s^{-2}$ which is such an extremely small value that it is normally neglected.