I came across these notes of Dyson on Relativistic Quantum Mechanics. There on p. 3, he mentions that the issue with the Klein-Gordon equation is that the only way to relate $\psi$ with a probability density (that has a continuity equation) is to define $$\rho=\dfrac{\iota}{2m}\bigg(\psi^*\dfrac{\partial \psi}{\partial t}-\psi \dfrac{\partial \psi^*}{\partial t}\bigg)$$ with the continuity equation $$\nabla \cdot \vec{j}+\dfrac{\partial \rho}{\partial t}=0$$ where $$\vec{j}=\dfrac{1}{2m\iota}\big(\psi^*\nabla\psi-\psi\nabla\psi^*\big).$$ He says that the issue with such a probability density is that since the Klein-Gordon equation is a second-order equation, both $\psi$ and $\dfrac{\partial \psi}{\partial t}$ constitute the initial condition and thus, are arbitrary - leading to the unavoidable negative probability densities.
But can't the requirement of a positive probability density be thought of as a restriction on the initial conditions themselves? Like in Special Relativity, velocity of a particle is a part of the initial condition but the theory restricts what kind of initial conditions one can have. Similarly, can't we restrict the form of the initial condition to ensure the non-negative nature of the probability density?