Why are orbits elliptical? Almost all of the orbits of planets and other celestial bodies are elliptical, not circular. 
Is this due to gravitational pull by other nearby massive bodies? 
If this was the case a two body system should always have a circular orbit.
Is that true?
 A: On the most fundamental level, ellipticity comes from the conservation of energy, angular momentum, and the $1/r^2$ gravitational force law. Any freshman taking classical mechanics should be able to take these three constraints and get ellipses. The impressive thing is how Newton took Keplers laws and worked backwards to get the laws of gravity and conservation.
A: No, any ellipse is a stable orbit, as shown by Johannes Kepler. 
A circle happens to be one kind of ellipse, and it's not any more likely or preferable than any other ellipse. And since there are so many more non-circular ellipses (infinitely many), it's simply highly unlikely for two bodies to orbit each other in a perfect circle.
A: 
If this was the case a two body system should always have a circular orbit.

There are a number of highly-eccentric orbits that aren't anywhere close to circular, but they're more difficult to maintain over time, as they're more likely to be biased by other objects.
For some spacecraft (eg, STEREO; watch the first movie), they actually use this behaviour so that the spacecraft orbit the earth such that the moon will effectively 'throw' the spacecraft where they're trying to get it.
The Voyager spacecraft used this multi-planet  Gravitational Assist known as Planetary Grand Tour to achieve solar escape velocity with very modest fuel requirements. 
It is not uncommon to use such assists as it can radically reduce the fuel costs of a mission  (to the point of making it even possible), in exchange for increased mission durations.
A: Many objects presently in orbit around larger objects were originally 'captured' by the gravity of the larger one as the smaller one happened to pass by closely enough. Of all the possible combinations of speed and direction of the two objects relative to each other at the time of gravitational capture, only a very special subset will result in a circular orbit; all others are elliptical with varying degrees of eccentricity.
A: A circle is a very difficult shape to maintain. Even the slightest deviation, and a circle is bypassed.
Orbits are elliptical when any of the following things happen:


*

*Another object strikes the planet in such a way to change its orbit. It would have to be massive compared to the primary object, at least a sizable fraction.

*Gravitational interaction with other nearby objects, especially if resonance occurs. This is why Pluto has such an elliptical orbit.

*Differing albedo can cause differences to occur over a long period of time.


I'm sure I could come up with other reasons as well.
In order to have a perfectly circular orbit, one must achieve the perfect speed for one's distance from the body around which they are orbiting. The lecture Astronomy 106, Orbital Velocity gives the formula, which is:
$$V_c = \sqrt {GM \over r}$$
Any deviation from this results in an elliptical orbit.
A: In addition to the other answers I want to remark that the calculations from the conversation and force laws give you conic sections for the two body systems, parabolas, hyperbolas and ellipses (including circles).
Ellipses are the only paths for orbits because the other paths never come near the starting point again.
A: A circle is only a special case of an ellipse and obeys all the same mathematical rules. So even circular orbits are elliptical. Origin chance and third+ body perturbations will have random effects on the ellipticity, so no surprise purely circular orbits are rare to non-existent being only one of an infinite number of possible outcomes.
What I find much more interesting is how close to circular our planetary orbits actually are. Excluding Pluto as being not-a-planet any more, that is.
A: Every circle is elliptical since no answer for PI has been or can fully be achieved. The elliptical model fits as well as any. When taking into consideration Higgs Boson and Dark matter and there possible inflection on string theory in the fabric of space with multiple universes, it is very possible that the distortion of space-time make it impossible to achieve the theoretical circle. Once these distortions have been fully understood, we may find that all elliptic's are in actuality the eternal, just perceived now as a different form. The problem exists within our capability to measure what requires eternal rules or current rule have built in ambiguities. We have not achieved the eternal, therefore perfection is out of reach. You can always say; "For all practical purposes" but, that does not lead to the perfect or sacred knowledge in the quest for certainty.
A: Perhaps the elliptic orbits arise because of an expanding universe. If the universe were stationary, the orbits might have been circular.
