The solution considers waves propagating in the positive $x$ direction, since for $x>a$ the wave function is $\psi(x) = F e^{ikx}$. Accordingly, the internal transmission rate for the internal segment $-a \le x \le a$ is given by the relative amplitude of the $e^{ikx}$ component, the one "transmitted" in the same direction as the outgoing wave. Similarly, the reflection coefficient is given by the "reflected" $e^{-ikx}$ component propagating in the opposite direction. Since in the inner region $\psi(x) = C e^{ikx} + D e^{-ikx}$, where both $C$ and $D$ are proportional to $A$, this gives $T_i = |C|^2/|A|^2$ and $R_i = |D|^2/|A|^2$, with $C$ and $D$ as in Eqs.(11), (12).