I always thought that almost all hydrogen and helium inside the Sun (and even in the convection zone) are completely ionized...
This question has been bothering me ever since it was asked. I had a similar, apparently naive, assumption until I bugged a solar physicist down the hall.
It turns out that not only does the sun become partially ionized low in the chromosphere and through much of the photosphere into the convection zone. The interesting part is not only are these regions not totally ionized, the ions that do exist were unexpected. For instance, there are several heavy elements/metals (e.g., silicon, sodium, etc.) that will freely give up electrons even at the low temperatures of the photosphere and there are corresponding quasi-stable H- and H2+ states in addition to the usual H+, He+, and He2+.
...so this doesn't seem to be the correct explanation of why convection dominates there for me.
As you might imagine, the ionization states are altitude-/depth-dependent and not trivial [e.g., Fontenla et al., 1990, 1991, 1993, 2002]. The level of complexity increases even further when including even heavier elements and the nuances of their electron orbitals, which have different frequency-dependent opacities.
Further, H- and H2+ can dominate the opacity in some places that should be too cold to support H+ [e.g., Fontenla et al., 1990, 1991, 1993, 2002].
So my question here is, at what depth from the photosphere is the temperature low enough for hydrogen to exist as atoms and not ions?
There is apparently neutral hydrogen well above the photospheric surface but it does not become a significant fraction of the charged density until until within a few thousand kilometers of the surface [e.g., Avrett et al., 1976]. The fraction of neutral hydrogen depends upon the rates of recombination and ionization.
Update
As Rob (Jeffries) pointed out, I did not discuss the Saha equation. It turns out that the regions of interest are not in local thermodynamic equilibrium or LTE, which is required for the use of the Saha equation. The Fontenla et al. group has been actively creating more and more complex solar atmosphere models for over 20 years and are considered the experts on this topic. If you scan through the references I provided, they do not mention the Saha equation, which was surprising to me the first time I read them.
However, Avrett et al. [1976] does discuss the continuum source function, $S_{\nu}^{c}$, for non-LTE systems. In the limit of LTE, the Saha equation can be used to transform $S_{\nu}^{c}$ to recover Planck's law.
Update 2
Rob (Jeffries) made several more arguments as to why the Saha equation is relevant and convinced me it is important for the convection zone. The models to which I refer only go ~1% into the convection zone and below that it starts to become more and more difficult to argue against using something like the Saha equation (i.e., the fluid goes to LTE rather quickly).
References
- Avrett, E.H., et al. "Excitation and ionization of helium in the solar atmosphere," Astrophys. J. 207, pp. L199-L204, 1976.
- Fontenla, J.M., et al. "Energy balance in the solar transition region. I. Hydrostatic thermal models with ambipolar diffusion," Astrophys. J. 355, pp. 700-718, 1990.
- Fontenla, J.M., et al. "Energy balance in the solar transition region. II. Effects of pressure and energy input on hydrostatic models," Astrophys. J. 377, pp. 712-725, 1991.
- Fontenla, J.M., et al. "Energy balance in the solar transition region. III. Helium emission in hydrostatic, constant-abundance models with diffusion," Astrophys. J. 406, pp. 319-345, 1993.
- Fontenla, J.M., et al. "Energy balance in the solar transition region. IV. Hydrogen and helium mass flows with diffusion," Astrophys. J. 572, pp. 636-662, 2002.