Do you need to solve the equation in Fourier (i.e. wavenumber-frequency space? The equation with boundary conditions falls easily enough to standard separation-of-variables techniques.
Assume $\phi(x,t) = X(x)T(t)$. Then the equation can be written as
$$ T''/T + 1 = -X''/X.$$
This is the separated form of the equation. Assume a separation constant $\lambda^2$ and you get two ordinary differential equations $T'' + (1 - \lambda^2)T = 0$ and $X'' + \lambda^2 X = 0$.
Solutions to the equation for $T$ take the form
$$T(t) = c \exp{(\sqrt{\lambda^2 - 1}t)} + d \exp{(-\sqrt{\lambda^2 - 1}t)}$$
and solutions to the equation for $X$ take the form
$$X(x) = a \cos{\lambda x} + b \sin{\lambda x}.$$
I've chosen to write $X$ as cosines and sines rather than complex exponentials for convenience later.
We can look at the boundary and initial conditions. Let look at the boundary condition first. We have $\phi(-L,t) = \phi(L,t)$ which implies $X(-L)T(t) = X(L)T(t)$. This implies that either $X(-L) = X(L)$ or $T(t) \equiv 0$. If $T(t) \equiv 0$ then we have the trivial solution $\phi(x,t) \equiv 0$. Looking for other solutions, then, we set $X(-L) = X(L)$. Referring to our solution for $X$, we conclude that $\lambda = n \frac{\pi}{L}$ for $n = 0, 1, 2, \ldots$ As there is a different solution for each possible value of $\lambda$, we arrive at the general solution for $X$:
$$X(x) = \sum_{n = 0}^\infty \left( a_n \cos(n\pi x/L) + b_n \sin(n\pi x / L) \right).$$
Next we look at the initial condition
We have that $\phi(x,0) = X(x) T(0) = Ce^{-x^2}$. If $T(0) \ne 0$ then we can rewrite this as $X(x) = C' e^{-x^2}$ where of course $C' = C/T(0)$. Thus we have
$$ C' e^{-x^2} = X(x) = \sum_{n = 0}^\infty \left( a_n \cos(n\pi x/L) + b_n \sin(n\pi x / L) \right).$$
We can exploit the orthogonality in the L$^2([-L,L])$ inner product of these sines and cosines on $[-L,L]$ to solve for the $a_n$ and $b_n$. Indeed, as $C' e^{-x^2}$ has even symmetry on $[-L,L]$ we quickly find that $b_n = 0$ for all $n$.
Finally, then we have the general solution $\phi(x,t) = X(x) T(t)$ with
$$X(x) = \sum_{n = 0}^\infty a_n \cos(n\pi x/L),$$
$$a_n = \int_{-L}^L C' e^{-x^2} \cos(n\pi x/L) dx,$$
and
$$T(t) = \sum_{n = 0}^\infty c_n \exp{(\sqrt{\lambda_n^2 - 1}t)} + d_n \exp{(-\sqrt{\lambda_n^2 - 1}t)}.$$
Without more boundary or initial conditions, we can't say more.