Dark age of the universe during the early universe and just after the habitable epoch,when the universe was finally cooled down allowing the ions to recombine into atoms, comes the Dark Ages who are currently thought to have lasted between 150 million to 800 million years after the Big Bang.how the universe transformed from being full of matter and light to a dark empty space and this epoch ended up by the formation of the first stars and galaxies?
 A: This seems to be still very much a mattter of opinion, based on the excerpt below from Space.com, which sums it up nicely and  which you may already have read.  
Lots of questions currently with not enough data to resolve, esp. with regard to dark matter and questions regarding the first stars.  Fingers crossed that LIGO and the JWT give us a clue in the next decade.

There are many questions that learning more about the dark ages could help answer. For instance, where did the monstrously large black holes seen at the hearts of virtually all large galaxies come from?
"The Milky Way has a black hole about 4 million times the mass of the sun, and some galaxies have black holes a billion solar masses large," Loeb said. This apparently holds true even for ancient galaxies such as ULAS J1120+0641, which apparently had a central black hole 2 billion times the mass of the sun only 770 million years after the Big Bang.
  "That's not a lot of time to build such black holes," Loeb said. "How did these form? What are the seeds of these black holes?"
In addition, a major enigma of the dark ages is how dark matter — the as-yet unidentified materialmaking up about 85 percent of all matter in the universe — might have influenced the formation of the first galaxies. This question is compounded by the fact "that we don't know what the nature of dark matter is," Loeb said.
Currently, the leading candidates for dark matter are particles that interact only weakly with regular matter and with each other. However, Loeb wonders if dark matter particles actually might interact with each other more than researchers generally suspect, given the behavior of nearby small galaxies.
"If we assume dark matter is non-interacting, when people do simulations of the evolution of galaxies such as the Milky Way, there should be many satellite galaxies around it," Loeb said. "However, when people look at the satellite galaxy population of the Milky Way, they find much fewer than the predicted number, and the inferred distribution of dark matter inside these dwarf galaxies is very different than what is predicted for them as well. Perhaps dark matter behaves differently than expected."
Another puzzle is what the first stars were like. In the incredible heat and pressure found in the cores of these stars, relatively simple elements such as hydrogen and helium were forged into heavier elements such as the carbon that life as we know it is based on and the oxygen we breathe.
"Currently, we think the very first stars were more massive than the sun — 10 times, maybe even 100 times more massive — and very short-lived, maybe living only a few million years," Loeb said.
However, there are calculations that suggest that under some circumstances, smaller stars could have formed back then. "These would be very poor in heavy elements, and we might be able to see them today if they exist, lurking in the halo of the Milky Way," Loeb said. "Were the first stars different from present-day stars? If we can, we'd like to see them to find out."
Secrets of the dark ages
To investigate the dark ages, one avenue scientists are pursuing involves hunting for the earliest stars and galaxies. Since it takes light time to travel, light that came from far away also must have come from long ago. As such, astronomers look deep in space to peer back in time.
"It's similar to archaeology — the deeper you dig, the more ancient layers you uncover," Loeb said. "Here, we're essentially digging in space."
One key tool for looking at the ancient past has recently drawn a great deal of controversy for its delays and cost — the James Webb Space Telescope. Still, if this space observatory ever flies, it could help reveal much about the early universe by catching the extremely faint light from the first galaxies.
"This telescope is the best hope we have to actually image the first generation of galaxies," Loeb said.
Another strategy for learning more about the dark ages would be looking at the scars that early stars and galaxies would have inflicted on the hydrogen surrounding them. Even cold hydrogen gives off light in the form of radio waves with a specific wavelength of 21 centimeters. By tuning in on that wavelength, scientists could thus see how this hydrogen changed over time in response to stellar radiation.
A number of radio telescope arrays under development will detect these 21-centimeter radio waves, Loeb said. These include the Murchison Widefield Array in western Australia, the Low-Frequency Array (spread across Europe, the Primeval Structure Telescope inChina, the Precision Array for Probing the Epoch of Reionization in South Africa, the Giant Metrewave Radio Telescope in India, and the Square Kilometer Array, to be constructed in either Australia or South Africa.
Scientists can also peer at early galaxies by looking for X-rays from their central black holes using telescopes such as NASA's Chandra X-ray Observatory. Future research could also detect the ripples in space-time known as gravity waves, released when black holes from early galaxies merged with each other.
A project called Advanced LIGO will have sufficient sensitivity to see gravity waves from mergers of stellar-mass black holes in nearby galaxies within a few years from now, Loeb said. An even more ambitious project known as LISA that could detect mergers of supermassive black holes in distant galaxies was once on the books, but budgetary woes have officially scrapped it for now.

