CAUTION - ANSWER INCOMPLETE There is a gap in my argument (see the send); it relies on the claim that
\begin{align}
- \hat O^\dagger \hat A = \hat A\hat O
\end{align}
for all hermitian $\hat A$ implies $\hat O = 0$ which may not be true. Please comment if you know how to prove this or know of a counterexample.
Update. Actually the claim above is definitely false in one dimension, so the ensuing argument is certainly incomplete.
Some notational clarifications.
Let me first that (3) as you wrote it, although very much standard, is really a rather severe abuse of notation.
The difference between the "total" and "partial" derivatives in the equation is that the partial derivative term is supposed to reference the time-dependence carried by the Schrodinger picture operator itself, while the total derivative refers to that plus the additional time-dependence introduced by conjugating the operator by $\hat U(t)$.
To see this, note that if as usual we define
\begin{align}
\hat A_H(t) = \hat U^\dagger(t) \hat A_S(t) \hat U(t) \tag{$\star$}
\end{align}
then differentiation with respect to time on both sides and invoking (1) yields
\begin{align}
\frac{d\hat A_H}{dt}(t) = U^\dagger(t)\frac{d \hat A_S}{dt}(t)\hat U(t) + \frac{1}{i\hbar} [\hat U^\dagger(t)\hat A_S(t) \hat U(t), \hat H] \tag{$\star\star$}
\end{align}
so if we feel like good physicists who like using partial derivative symbols in rather odd ways and define
\begin{align}
\frac{\partial \hat A_H}{\partial t}(t) = U^\dagger(t)\frac{d \hat A_S}{dt}(t)\hat U(t)
\end{align}
then we get precisely your equation (3).
Proof that (3) $\implies$ (1).
All right, so now that we know what that equation is really saying. Let's try to use it to prove (1) as you desire. We start with $(\star)$ and $(\star\star)$ and try to prove (1). In fact, plugging the $(\star)$ into $(\star\star)$ and canceling the common term yields
\begin{align}
\frac{d \hat U^\dagger}{dt}(t) \hat A_S(t)\hat U(t) + \hat U^\dagger(t) \hat A_S(t) \frac{d\hat U}{dt}(t) = \frac{1}{i\hbar} [\hat U^\dagger(t)\hat A_S(t) \hat U(t), \hat H]
\end{align}
Expanding out the commutator, and multiplying both sides by $\hat U(t)$ on the left, and $\hat U^\dagger(t)$ on the right, we find that
\begin{align}
\hat U(t) \frac{d\hat U^\dagger(t)}{dt} \hat A_S(t) + \hat A_S(t) \frac{d \hat U}{dt}(t) \hat U^\dagger(t) = -\frac{1}{i\hbar}\hat U(t)\hat H \hat U^\dagger (t) \hat A_S(t) + \frac{1}{i\hbar}\hat A_S(t) \hat U(t) \hat H \hat U^\dagger (t).
\end{align}
which, upon a some rearrangement gives
\begin{align}
\left(\hat U(t) \frac{d\hat U^\dagger(t)}{dt} + \frac{1}{i\hbar}\hat U(t)\hat H \hat U^\dagger (t)\right)\hat A_S(t)
=\hat A_S(t)\left(\frac{1}{i\hbar}\hat U(t) \hat H \hat U^\dagger (t)-\frac{d \hat U}{dt}(t) \hat U^\dagger(t)\right)
\end{align}
Now let the term in parentheses on the right be called $\hat O(t)$, then using the fact that $\hat A_S(t)$ is hermitian, this equation can be written as
\begin{align}
-\hat O^\dagger(t) \hat A_S(t) = \hat A_S(t) \hat O(t)
\end{align}
This holds for all hermitian $\hat A_S(t)$, so $\hat O(t) = 0$, which is to say that
\begin{align}
\frac{1}{i\hbar}\hat U(t) \hat H \hat U^\dagger (t)-\frac{d \hat U}{dt}(t) \hat U^\dagger(t) =0
\end{align}
and (1) follows upon multiplying both sides on the left by $\hat U^\dagger(t)$.