For a system of $N$ particles with $k$ holonomic constraints, their Cartesian coordinates are expressed in terms of generalized coordinates as $$\mathbf{r}_1 = \mathbf{r}_1(q_1, q_2,..., q_{3N-k}, t)$$ $$...$$ $$\mathbf{r}_N = \mathbf{r}_N(q_1, q_2,..., q_{3N-k}, t)$$
Each particle in space can be uniquely identified by 3 independent variables, so why aren't the above of the form $$\mathbf{r}_i = \mathbf{r}(q_{i1}, q_{i2}, q_{i3})?$$
Note there is only one transformation $\mathbf{r}$ for all $\mathbf{r}_i$, a function of only three generalised coordinates and independent of $t$.