I can see two big differences between a hypothetical perfect conductor and a superconductor:
1. A "perfect" conductor will keep its magnetic flux condition. A superconductor will always expel the magnetic flux (Meissner effect).
What does this mean?
Let's say that you have a regular conductor in an external magnetic field, which, of course, is also inside the material. Now, somehow, out of the clear blue sky, this conductor becomes "perfect". The magnetic field will be kept inside the "perfect"conductor as when it was "regular". Now, turn off the external magnetic field. The field inside the perfect conductor stays the same.
Let's do the opposite. No applied magnetic field when the material was regular. It becomes perfect. Now, turn on the field. The "perfect" metal adapts itself to have no field inside it.
For a perfect metal, in short, whichever magnetic field was inside it when it was "regular" will be kept in the "perfect" state.
A superconductor behaves differently. Whatever its initial state, when the material goes superconductor it expels the magnetic field. The magnetic field inside a superconductor will always be zero (well in Type II superconductors there is a mixed state, but that is another story).
To account for this difference, the London brothers developed an addition to Maxwell equations.
2. Second difference: The superconducting gap
Roughly, superconductivity comes to life because electrons form pairs (Cooper pairs), which have a lower energy when compared to two isolated particles. This pairs can go into a single quantum state that represents superconductivity. The energy gain per electron in the Cooper pair is called the "superconducting gap". If you give that energy back to the superconductor, the pairs will be broken and the superconductor comes back to be a normal metal. You destroy superconductivity.
You can give this energy in several forms. The first, obviously, is warming the material. The critical temperature of a superconductor is the temperature that is equivalent to the superconducting gap. You can also apply a high magnetic field so that the magnetic energy goes above a threshold (the critical field) that kills superconductivity. Or make a very large current go through the material. Above some value (the critical current) superconductivity will cease to be. Even light, intense enough, will destroy superconductivity by giving the photon energy to the Cooper pair and breaking it apart.
A perfect metal would not have such a "superconducting gap".