Background
Say that I have a tight binding Hamiltonian (with spinless fermions) of the form $$H = - 2t \sum_{ij} (c_i^{\dagger} c_j + h.c) - 2\mu \sum_i c^{\dagger}_i c_i$$ where we only sum over nearest neighbours and $\mu$ is the chemical potential. If there is only one sublattice I can diagonalize this Hamiltonian using a Fourier transformation $c_i = 1/N \sum_k e^{ikx}c_k$. Furthermore, to make the particle-hole symmetry explicit I symmetrize the operators by writing \begin{equation} c^{\dagger}_k c_k = \frac{1}{2}\left( c^{\dagger}_k c_k + c^{\dagger}_k c_k\right)= \frac{1}{2}\left( c^{\dagger}_{k} c_k - c_{-k} c_{-k}^{\dagger}\right) + constant \end{equation} and ignore the constant. I then obtain the Hamiltonian \begin{equation} H = \sum_k \left[c^{\dagger}_k\quad c_{-k}\right]\begin{bmatrix} \gamma_k - \mu & 0 \\ 0 & -\gamma_k + \mu \end{bmatrix} \begin{bmatrix} c_k \\ c^{\dagger}_{-k} \end{bmatrix}. \end{equation} Here $\gamma_k = -t \sum_{\delta} e^{i \mathbf{k}\cdot {\delta}}$ where $\delta$ is the vector connecting nearest neighbours.
Thus the eigenvalues of the electrons is $\epsilon_e = \gamma_k - \mu$ and the eigenvalues of the holes is $\epsilon_h = -\gamma_k + \mu$ and the chemical potential takes the role of the Fermi energy $\mu = E_f$.
The problem
Ok, now let's say that there are two sublattices $A$ and $B$ with creation/annhilation operators $A_i$ and $B_i$. By following the procedure outlined above: first Fourier transformation, then a symmetrization of all operators; I obtain the Hamiltonian
\begin{equation} H = \sum_k \left[A^{\dagger}_k\quad B^{\dagger}_k \quad A_{-k} \quad B_{-k}\right]\begin{bmatrix} -\mu & \gamma_k & 0 & 0 \\ \gamma_k & -\mu & 0 & 0 \\ 0 & 0 & \mu & -\gamma_k \\ 0 & 0 & -\gamma_k & \mu \end{bmatrix} \begin{bmatrix} A_k \\ B_{k} \\ A^{\dagger}_{-k} \\ B^{\dagger}_{-k} \end{bmatrix}. \end{equation} In this case I find the 4 eigenvalues \begin{equation} \begin{split} &\epsilon_1 = \gamma_k + \mu\\ &\epsilon_2 = \gamma_k - \mu\\ &\epsilon_3 = -\gamma_k + \mu\\ &\epsilon_4 = -\gamma_k - \mu. \end{split} \end{equation}
My question is: what kind of particles do the eigenvalues $\epsilon_{1,2,3,4}$ describe physically? To me it seems that $\epsilon_{2,3}$ describe electrons and particles as above. But what on earth is the physical interpretation of $\epsilon_{1,4}$? I think they are strange because if I set $\mu = E_f$ then the eigenvalues describe particles that never cross the Fermi energy $E_f$.
I do of course understand that I get two additional eigenvalues because there are degrees of freedom associated with the two sublattices. However, how do I reconcile the two ways of looking at the tight-binding Hamiltonian presented here? Shouldn't I get the same answer if I set the two sublattices equal by letting $B \rightarrow A$?
The context of the question is that I want to look at Andreev reflection in a normal-metal - superconductor hybrid junction with two sublattices. Which one of these excitations are holes and contribute to the Andreev reflection?