By definition,
$$\rho_A = \mathrm{Tr}_B (\rho_{AB}) = \sum_B \langle B| \rho_{AB} |B \rangle$$
Differentiating both sides
$$\dot{\rho}_A = \sum_B \langle B| \dot{\rho}_{AB} |B \rangle = \mathrm{Tr}_B (\dot{\rho}_{AB})$$
because the basis are time-independent. I have checked the literature I do not know any practical case where time-dependent basis are used to compute averages; but, you ask above, in a comment, about using a time-dependent basis. Let us see what happen if you chose a time-dependent basis $| B(t) \rangle$. In this case the above equation is augmented, a priori, by a term
$$\sum_B \langle \dot{B} | \rho_{AB} |B(t) \rangle + \sum_B \langle B(t)| \rho_{AB} | \dot{B} \rangle$$
but using $|\dot{B} \rangle = (H/i\hbar) | B(t) \rangle$ and the conjugate
$$-\sum_B \langle B(t) | (H/i\hbar) \rho_{AB} |B(t) \rangle + \sum_B \langle B(t)| \rho_{AB} (H/i\hbar) | B(t) \rangle = 0 \>\>\>\>\>\>\>\> (1)$$
where, in the last step, I have used the cyclic invariance of the trace.
Therefore the equation $\dot{\rho}_A = \mathrm{Tr}_B (\dot{\rho}_{AB})$ is valid for both time-dependent and time-independent basis.
EDIT: In response to mistaken comments I am adding some extra details. The left-hand side of equation (1) can be written as
$$-\mathrm{Tr}_B \{(H/i\hbar)\rho_{AB}\} + \mathrm{Tr}_B \{\rho_{AB}(H/i\hbar)\}$$
Using now the cyclic invariance of the trace $\mathrm{Tr}_B \{XY\} = \mathrm{Tr}_B \{YX\}$ for $X = (H/i\hbar)$ and $Y = \rho_{AB}$, we obtain
$$-\mathrm{Tr}_B \{\rho_{AB} (H/i\hbar)\} + \mathrm{Tr}_B \{\rho_{AB}(H/i\hbar)\} = 0$$
explaining the zero in equation (1).