Since OP's problem looks like a homework assignment, we will only provide OP with a series of hints rather than a full solution.
I) The Lagrangian $L~=~\int \! dx ~{\cal L}$ is the spatial integral of the Lagrangian density ${\cal L}$. Let us call the position field $q(x,t)$ and the corresponding velocity field $v(x,t)$. The Lagrangian $L[q(\cdot,t),v(\cdot,t)]$ is a functional of the position and the velocity fields, cf. e.g. this Phys.SE answer. The momentum field is the functional derivative
$$ \tag{1} p(x,t)~:=~\frac{\delta L[q(\cdot,t),v(\cdot,t)]}{\delta v(x,t)}.$$
An infinitesimal variation $\delta L$ of the Lagrangian functional $L$ is given by
$$\tag{2} \delta L~=~\int \! dx~\left( \frac{\delta L}{\delta q}\delta q+\frac{\delta L}{\delta v}\delta v \right).
$$
The exercise basically asks OP to derive a functional version of Noether's Theorem, which he probably knows for ordinary point mechanics.
II) Let
$$\tag{3} \delta q~=~\varepsilon Y$$
be an infinitesimal variation of the position field,
where $\varepsilon$ is an infinitesimal constant, and where $Y$ is the generator. Correspondingly, the velocity field transforms as
$$\tag{4}\delta v~=~\varepsilon \dot{Y}.$$
(The transformation (3) is a so-called vertical transformation. In general, one could also allow horizontal contributions from variation of $x$ and $t$.)
III) Assume that the transformation (2) is a so-called quasi-symmetry
$$\tag{5} \delta\left(\left. L \right|_{v=\dot{q}}\right)~=~ \varepsilon\frac{d}{dt} \left(\left. F\right|_{v=\dot{q}}\right),$$
where $F[q(\cdot,t),v(\cdot,t)]$ is some functional. (If $F=0$ is zero, then the quasi-symmetry becomes a symmetry of the Lagrangian $L$.)
IV) The (temporal component of the) bare Noether current $j^0$ for a vertical transformation (3) is simply the momentum field $p$ times the vertical generator $Y$,
$$\tag{6} j^0 ~:=~p Y. $$
The bare Noether charge $Q^0$ is the spatial integral
$$\tag{7} Q^0 ~:=~ \int \! dx~j^0. $$
The full Noether charge $Q$ is improved with (minus) the $F$-functional,
$$\tag{8} Q ~:=~Q^0-F. $$
Formula (8) corresponds to OP's last formula (v1). Noether's Theorem states that $Q$ is a conserved quantity on-shell, i.e. if the equation of motion
$$\tag{9} \left.\frac{d}{dt} \left(\frac{\delta L}{\delta v}\right|_{v=\dot{q}}\right)~=~\left. \frac{\delta L}{\delta q}\right|_{v=\dot{q}} $$
is satisfied. The proof in the functional setting is very similar to the usual proof given in ordinary point mechanics.