I would understand discrete such that there is a minimum distance between the nearest element. A cubic lattice is an example of this.
In mathematics, the expression countable means that there exists a mapping from the natural numbers to the set you describe. This means that you can sequentially number every point. In a cubic lattice, this is certainly possible with an appropriate scheme. So a cubic lattice (as in an ordinary solid crystal) would serve as a countable and discrete space.
The rational numbers $\mathbb Q$ are also countable. Yet I would not call it discrete because you can always find (countable) infinitely many numbers between any two numbers. If you would make a spacetime which was $\mathbb Q^{1,3}$ instead of the usual $\mathbb R^{1,3}$ it would be countable but I wouldn't call it discrete.
A discrete spacetime is used in K. Wilson's lattice field theory where it serves as a regulator. The coordinates there do take discrete values, you just number the lattice sites with numbers from $\mathbb N^4$.
In quantum field theory, spacetime is not quantized. It is also uncountably infinite.
About the “no standard way”: Discretizing the space with a lattice is a computation aid. It has no physical interpretation. It is just darn useful when doing simulations on a computer!
There are thoughts that spacetime might be discrete in a physical way. One of this is quantum loop gravity which discretizes space at the order of $10^{-34} \, \mathrm m$. This is so small that nobody has any idea what could happen there.