The exact solution of your equation can be written as
$$x(t) = x(0) + \frac{m}{6 \pi a \nu} \dot{x}(0) - \frac{m}{6 \pi a \nu} \dot{x}(0) \, \text{e}^{-\frac{6\pi a\nu}{m}t} + \frac{1}{m}\int_0^t \text{d}\tau_1 \int_0^{\tau_1} \text{d}\tau_2 \text{e}^{\frac{6\pi a\nu}{m} \left(\tau_2-\tau_1\right)} F(\tau_2) \, . $$
$x(0)$ and $\dot{x}(0)$ are the initial conditions. Then whatever you want to compute, you can write it as an expression that depends on $F(t)$ and take its average over the fluctuations of $F(t)$.
For example
\begin{align*} \langle x(t) \rangle = & \langle x(0) \rangle + \frac{m}{6 \pi a \nu} \langle \dot{x}(0) \rangle- \frac{m}{6 \pi a \nu} \langle \dot{x}(0) \rangle \, \text{e}^{-\frac{6\pi a\nu}{m}t} \\ & + \frac{1}{m}\int_0^t \text{d}\tau_1 \int_0^{\tau_1} \text{d}\tau_2 \text{e}^{\frac{6\pi a\nu}{m} \left(\tau_2-\tau_1\right)} \langle F(\tau_2) \rangle \, .\end{align*}
If your particle starts at rest and at the origin,
$$ \langle x(0) \rangle = 0 \, \qquad \langle \dot{x}(0) \rangle = 0 \, ,$$
and if it experiences a constant force,
$$ \langle F(t) \rangle = F \, ,$$
then you find
\begin{align*}\langle x(t) \rangle & = \frac{F}{m}\int_0^t \text{d}\tau_1 \int_0^{\tau_1} \text{d}\tau_2 \text{e}^{\frac{6\pi a\nu}{m} \left(\tau_2-\tau_1\right)} \\
& = \frac{F}{m} \frac{m}{6 \pi a \mu} \left[ t + \frac{m}{6 \pi a \nu} \left( \text{e}^{-\frac{6 \pi a \nu}{m}t}-1\right) \right] \, .\end{align*}
You see that you can choose the statistics of $F(t)$ freely. Then if you know the moments of $F(t)$, you can compute the moments of $x(t)$. It's all about computing integrals. Typically one chooses Gaussian statistics with
$$ \langle F(t) \rangle = 0 \, , \qquad \langle F(t_1) F(t_2) \rangle = D \, \delta(t_1-t_2) \, .$$
If you insist on solving this problem numerically, you need to discretise time
$$ t \in \left[0,\infty\right[ \rightarrow t \in \left\{t_i\right\}_{i = 1,..,N} \, . $$
Then you can sample $F(t)$ according to your favourite probability distribution
$$ P\left[F(t_1),F(t_2),..,F(t_N)\right] \, .$$
For every sample you get a discretised function, $F(t_i)$ and you can switch to finite difference derivatives (for example) to solve your differential equation. Then you average at the end.