I take him to mean that starting out the derivation of the expressions for electrostatic energy with the expression $\frac{q_1q_2}{4\pi \epsilon_0 r_{12}}$, i.e. electrostatic energy equals the work required to bring two$two$ charges together., from this and the principle of superposition, you can get $U = \frac{1}{2}\int \rho \,\phi \,dV$, where $\phi$ at a point is made up of the contributions from all other charges than the charge $\rho \, dV$ at that point. (So far in his derivation, even in this expression, there is only energy $between$ charges, and an isolated point charge in the integral therefore does not make sense). It could have ended there with this expression (with energy maybe located where the charges are, i.e. $\phi \, \rho$) and point charges would not give us any headache. But because of the additional fact that we also have that (numericaly at the least) $U = \frac{\epsilon_0}{2}\int E \cdot E \,dV$, and that we can interpret this as there being an energy density $\frac{\epsilon_0}{2}E^2$ associated with the field, and because of the fact that this expression is actually$actually$ the correct distribution of enery (which is consistent with, but cannot be deduced from electrostatics), because of this it follows that even a single point charge, with no other charges around, will also have energy in its field (so the energy isnt only $between$ charges anymore), namely with density $\frac{q^2}{32\pi^2 \epsilon_0 r^4} $ at a distance r (and the integral of this diverges).