In the case of a simple pendulum, it is physically intuitive that the time-period should increase with the increase in l (distance traveled over an oscillation is increasing linearly with l). In the same sense what is the intuitive physical explanation of this apparently counter-intuitive behavior?
In my opinion, the behaviour of a simple pendulum is not so intuitive. I guess if a common visitor of the Paris Pantheon is asked about the period of the Foucault's pendulum, it would be no surprise if some answers put the mass as a variable for example, and miss the role of the length.
But, we can have an "educated" intuition of the rigid body oscillations: as the moment of inertia is $\alpha mr^2$, where $\alpha$ is some constant, increasing $l$ means decreasing the length parameter ($\frac{r^2}{l}$) inside the square root. The period is proportional to the square root of the "length" so to speak, if l is small compared to the other term. And the mass cancels.
So its behavior is intuitive in this meaning.