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Jun 10, 2019 at 11:54 vote accept Confinement
Jun 10, 2019 at 12:44
Jun 9, 2019 at 19:01 vote accept Confinement
Jun 10, 2019 at 9:53
Jun 9, 2019 at 18:58 comment added Confinement Thank you for your elaborative answer! The last few sentences of your second paragraph made it clear that the remaining 1/5 of the molecules indeed should not collapse. My confusion comes from the change in Helmholtz free energy upon collapse that Dill and Blundell use (p. 136): $$\Delta F_{collapse}=F_{closed}-F_{open}=-\epsilon +k_{B}T \ln{4}$$ Which somehow suggests that this collapse would still be favourable. I suppose this arises due to them considering the collapsed and closed conformations as two distinct systems?
Jun 9, 2019 at 18:28 history answered user197851 CC BY-SA 4.0