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Examining the presence of persistent domain from time series data

There are three variables, $X_t$, $Y_t$, and $Z_t$ that are dependent of each other, and I have the time series data of those variables from replicated experiments. The stochastic dynamics look quite ...
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26 views

bimolecular reaction master equation

I was wondering how to write down the deterministic rate equation for a bimolecular reaction with similar particles. e.g. $A \rightarrow^{k_+} B +B$ and $B +B \rightarrow^{k_-} A$ now the rate ...
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81 views

Reference for stochastic processes which helps moving from a basic level to a measure theory one

I'm looking for a reference (books, notes, lectures) which helps a physicist to understand the language of measure theory in the context of stochastic processes (in particular markov chains). I've ...
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28 views

Describe Ising model dynamics in stochastic differential equation or stochastic process

The Ising model is described by the Hamiltonian $$ H(\sigma) = - \sum_{<i~j>} J_{ij} \sigma_i \sigma_j -\mu \sum_{j} h_j\sigma_j, $$ and is treated extensively by equilibrium statistical ...
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27 views

transforming experimental rate constant to monte-carlo rate constants?

I am trying to write a kinetic monte carlo code for polymerization process, but i am confused about how to compare my monte carlo equilibrium with analytical calculations. as an e.g. $X + X ...
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29 views

characterising basins of attractions for master equations

I have a master equation for $(x,y,z)$ with the constraint $x+y+z=N$. $x$ can be regarded as the number of animal of a certain species in the whole system. In other words, I have a differential ...
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87 views

First passage time of diffusing particle with partially absorbing boundary

Given the solution to the spatiotemporal evolution of a single particle on a 1-D surface $P(x,t)$ a nice result (that I gleaned elsewhere on physics.SE) is that for a boundary at $x=0$ where ...
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72 views

Classical systems with strong coupling

I would like to have some examples of classical systems with "strong" coupling coefficient (in their action term). Specifically, I am looking for intermediate or cross-over ranges of coupling ...