I think the answer is found in another reference on beta decay, similar to where this question originated. It describes the nuclear radius R as being expressed in terms of the electron Compton wavelength. Then
$$
R_{natural} = \frac{R}{\hbar\,/\,m_ec} = R\frac{m_ec^2}{\hbar c} \approx \frac{(1.2\,\text{fm})\, (0.511 \,\text{MeV})}{197.327\,\text{MeV fm}}A^{1/3} \approx 3.3 \times 10^{-3} A^{1/3},
$$
if I make the assumption the authors mean the reduced Compton wavelength and again set $\hbar = c = 1$.
This makes sense in the context of beta decay (which I forgot to mention I was looking at originally). Nuclear physics is normally non-relativistic, but beta decay results in relativistic electrons and neutrinos and we must handle them relativistically. Integrals are then often made dimensionless by expressing energies in the ratios $\epsilon = E\,/\,m_e$, so a dimensionless nuclear radius is logical here.