I'm trying to numerically solve the differential equations of motion in a system with multiple springs of very high frequency. Because the solution is often a combination of rapidly-oscillating sine and cosine waves, it takes a very long time for a numerical solver to find the answer.
However, the fourier transform of the solution is probably fairly simple - it's nearly a delta function peaked at the frequency (or frequencies) at which the system oscillates.
Since Fourier transforms turn $\frac{df}{dx}$ into $2 \pi i \xi \hat{f}(\xi)$, it would seem that we could turn all of Newton's equations of the form $F_k=m\frac{d^2}{dt^2} x_k$ (representing, say, the $k$th particle or rigid body in a complicated system) into $\hat{F_k} = m (2 \pi i t)^2 \hat{x_k}$ (where the Fourier transform is taken with respect to time). Then, we could solve all of these simpler equations for the values of the $\hat{x_k}$, then take the Fourier transform (numerically).
So, do people ever apply Fourier transforms to the case of many-body systems with some harmonic oscillators?